PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07055.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 140aa    MW: 16147.4 Da    PI: 9.8305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07055.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.82.1e-4011304128
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkat 86 
                              G+rF+Pt ee++++yLk+k+ +k+  ++e+i+e++iy ++P++Lp  +k+++++  wyfF++r+ ++++ +k ++r+t sgyWkat
  Rsa1.0_07055.1_g00001.1   1 GYRFSPTGEEVINYYLKNKILDKPWLVNEAISEINIYAYDPESLPslSKLESKDLVWYFFTPREYHASEkKKGTKRTTPSGYWKAT 86 
                              99**********************999899***************5447777888********9988762667888********** PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g d++v++k  +g ++g+kktLv+++g++ +g+ t Wvmhey++
  Rsa1.0_07055.1_g00001.1  87 GVDRKVKDKrgNGVEIGIKKTLVYHHGKSANGVWTPWVMHEYHI 130
                              ********9777788***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023652.0E-241130IPR003441NAC domain
PROSITE profilePS5100541.4541140IPR003441NAC domain
SuperFamilySSF1019417.45E-421133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
GYRFSPTGEE VINYYLKNKI LDKPWLVNEA ISEINIYAYD PESLPSLSKL ESKDLVWYFF  60
TPREYHASEK KKGTKRTTPS GYWKATGVDR KVKDKRGNGV EIGIKKTLVY HHGKSANGVW  120
TPWVMHEYHI TSLPPTQVTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-25113018140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204391e-148KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111357.18e-86PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1266e-68NAC69_ARATH; NAC domain-containing protein 69
TrEMBLM4F5H19e-86M4F5H1_BRARP; Uncharacterized protein
STRINGBra036327.1-P3e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.19e-60NAC domain containing protein 69